PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038300.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 94aa    MW: 10358.9 Da    PI: 10.4908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038300.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.5e-125683598
                 EEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 35 tltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 t++l++esgrs   k+i r ks+   + lt+GW eF + n++ +gD+v F++++  ++   ++vfr
  Pbr038300.1  5 TVMLRNESGRSCCAKVILRPKSSFhrMELTTGWAEFSNTNQISDGDTVNFEFVK--QTVIQIHVFR 68
                 8*****************999988667889*********************876..5555788887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.715170IPR003340B3 DNA binding domain
PfamPF023624.5E-10469IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-11469IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-11468IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-8468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSTGTVMLRN ESGRSCCAKV ILRPKSSFHR MELTTGWAEF SNTNQISDGD TVNFEFVKQT  60
VIQIHVFRAV RGKRCAVVLG APNVKNESQL KIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356789.11e-47PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A498K6M81e-43A0A498K6M8_MALDO; Uncharacterized protein
STRINGXP_009356789.14e-47(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546