PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038414.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 531aa    MW: 56990 Da    PI: 8.6183
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038414.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32244300259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dD ynWrKYGqK vkgsefprsYY+Ct+ +Cpvkkkvers   ++++ei+Y+g+Hnhe
  Pbr038414.1 244 DDSYNWRKYGQKLVKGSEFPRSYYKCTHMNCPVKKKVERSP-SGEITEIIYKGQHNHE 300
                  8****************************************.9**************8 PP
2WRKY105.92.1e-33416474159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k+v++tYeg+Hnh+
  Pbr038414.1 416 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHVERASTDAKAVITTYEGKHNHD 474
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28234302IPR003657WRKY domain
PROSITE profilePS5081124.179238302IPR003657WRKY domain
SuperFamilySSF1182901.06E-25240302IPR003657WRKY domain
SMARTSM007741.1E-35243301IPR003657WRKY domain
PfamPF031063.9E-25244300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-37401476IPR003657WRKY domain
SuperFamilySSF1182903.4E-29408476IPR003657WRKY domain
PROSITE profilePS5081138.147411476IPR003657WRKY domain
SMARTSM007743.2E-39416475IPR003657WRKY domain
PfamPF031066.9E-26417474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MTAKTQGSNR VTVSAPPPQQ QPQRPVIPPP PRPSAEALFS GGSGASPGPM TLVSSFFETY  60
PESDFRSFSQ LLAGAMGSPV GSTRGMSFFS DNPADGLGKS GGGSEYGGEG SSGFKQSRPM  120
SLAVARPPLF TVPPGLSPSG LLNSPGFYSP QSPFGMSHQQ ALAQVTAQAA LAQSRVYMQP  180
DYQPSSVAAP TEPQACQPSL MPEEASRQLT LPSTSDTKSS VRQSSEASHS DGKYQPSSTD  240
RPADDSYNWR KYGQKLVKGS EFPRSYYKCT HMNCPVKKKV ERSPSGEITE IIYKGQHNHE  300
VPQPSKRPKD GDLNGPKPEN GLQRRVGDSN RLSENVASHS QPEKDQESTG AASGQLPGGS  360
DNEELGDGET REGGDADEPN AKRRNVDVGA SEVALPQKMV TEPKIIVQTT SEVDLLDDGY  420
RWRKYGQKVV KGNPHPRSYY KCTFAGCNVR KHVERASTDA KAVITTYEGK HNHDVPAARN  480
SSHSTANNSA SQLKPPASGA PQHTLLKGRE YGNNDQRPVL LQLKEEQIVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-39244477878Probable WRKY transcription factor 4
2lex_A2e-39244477878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038414.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0529390.0KP052939.1 Pyrus pyrifolia WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360587.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-144WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A498HES00.0A0A498HES0_MALDO; Uncharacterized protein
STRINGXP_009360587.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-127WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]