PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038529.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 253aa    MW: 28689.9 Da    PI: 7.8449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038529.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.3e-08189243146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      + +W+ eE+e l+++v+ + +       Wk I +  g      Rt+ ++k++w++
      Pbr038529.1 189 KVPWSVEEEEMLKKGVQIFSKIdertlPWKQILEFGGsaflHSRTPVELKNKWRT 243
                      579****************977*******************9***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.0E-6188247IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-11189250IPR009057Homeodomain-like
PROSITE profilePS500906.806189245IPR017877Myb-like domain
CDDcd116602.81E-10190246No hitNo description
SuperFamilySSF466892.84E-9191250IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGIWERXXXX XXXXXXEHLE KQCEERANEI NDLQLHNITG TEQQVAPSGS CTRFNSECRD  60
ESVTLIGINL DVSTGEKEWR EKVIQTCISV VGLDGCQNQV PAKGDTLSSK NAVSLLADKR  120
QAVVTEQEDL QRHITNAREV QGHALNIDSE QAGARISSTS NYNARLRTKN PYPVFSPHIP  180
TISQLRQIKV PWSVEEEEML KKGVQIFSKI DERTLPWKQI LEFGGSAFLH SRTPVELKNK  240
WRTICRRRVK LN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038529.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334961.11e-118PREDICTED: uncharacterized protein LOC103927742
TrEMBLA0A498IG551e-131A0A498IG55_MALDO; Uncharacterized protein
STRINGXP_009334961.11e-117(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224