PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038562.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 432aa    MW: 46735 Da    PI: 8.532
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038562.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1897144255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr ++ +g+WvAeI        rkr +lg++ tae+Aa+a++aa+++l+g
  Pbr038562.1  97 KYRGVRLRS-SGKWVAEIGQK-----RKRLWLGTYPTAEMAARAYDAAALSLKG 144
                  8*****999.7******8884.....7************************998 PP
2AP256.66.4e-18308355255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr +  +g+WvAeIr       rk+f++g++ tae+Aa+a++aa+++l+g
  Pbr038562.1 308 KYHGVRLRC-SGKWVAEIRQK-----RKKFWVGTYPTAEMAARAYDAAALSLKG 355
                  8*****887.8*********4.....6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.01E-1896154No hitNo description
PROSITE profilePS5103221.64197152IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1997153IPR016177DNA-binding domain
SMARTSM003809.4E-3397158IPR001471AP2/ERF domain
PfamPF008479.4E-1497144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2697153IPR001471AP2/ERF domain
PRINTSPR003671.1E-798109IPR001471AP2/ERF domain
PRINTSPR003671.1E-7118134IPR001471AP2/ERF domain
CDDcd000181.16E-14307365No hitNo description
SuperFamilySSF541711.37E-17308364IPR016177DNA-binding domain
SMARTSM003801.1E-26308369IPR001471AP2/ERF domain
PROSITE profilePS5103220.073308363IPR001471AP2/ERF domain
PfamPF008474.8E-13308355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-24308364IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSPLSIPAAA AKAAAEAEAA SGKIRLYGKQ RLKKAEPKGK AQESTITCAS TDCDVEKLVS  60
TAAGQEPNNV EEQSNKKKRQ TNSTLTSDDH SDSNHQKYRG VRLRSSGKWV AEIGQKRKRL  120
WLGTYPTAEM AARAYDAAAL SLKGASANLN FPELTQALPL SDSLSPMDIQ VAASASEEKQ  180
IIGEAVTKEA EPSSKAQEST SICASIDCDV DKLVSTAAEN CTSEKGQQPN NVEEQNNKKK  240
RQRTLNCTSK KGQQPNNVEE QNNKKKRQRT LNCTSKKGQQ PNNVEEQNNK KRQRTSTSDD  300
HSGSNHQKYH GVRLRCSGKW VAEIRQKRKK FWVGTYPTAE MAARAYDAAA LSLKGASADL  360
NFPELAQALP QSDSLSPMDI QAAALASEEK HIVGEAVAEE AEPSSKAQEL TSICASTDCD  420
AEKLVSIIEG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1493363972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268KKKRQR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038562.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324471e-103GU732447.1 Malus x domestica AP2 domain class transcription factor (AP2D23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375741.14e-97ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ76e-28ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A498KHV90.0A0A498KHV9_MALDO; Uncharacterized protein
STRINGXP_008375741.11e-96(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3827022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-23ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]