PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038734.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 383aa    MW: 43253 Da    PI: 6.5087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038734.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012246267223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC+ C+k+F++   L  H  +H
  Pbr038734.1 246 KCETCNKVFKSYQALGGHRASH 267
                  7***********9999998887 PP
2zf-C2H211.30.001303325123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C ++Fs+   L  H r+H
  Pbr038734.1 303 HECPVCFRVFSSGQALGGHKRSH 325
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.538330IPR007087Zinc finger, C2H2
SMARTSM0035531329IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-5425IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349245272IPR007087Zinc finger, C2H2
SMARTSM003550.3245267IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.83E-7246267No hitNo description
PfamPF139128.0E-11246269IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
SuperFamilySSF576673.83E-7298325No hitNo description
PROSITE profilePS501579.307303330IPR007087Zinc finger, C2H2
SMARTSM003550.19303325IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-11303325IPR007087Zinc finger, C2H2
PROSITE patternPS000280305325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGERCKICMR SFPNGRALGG HMRSYVMNHP IPPKPEDEDE EANREQTQLT IDELCDLASA  60
SSPSSSDDEE EHDDDMIYGL RENPKRSIKL VDPEFSFVIH AGSIVLQDRE SETESSKNPT  120
RRRCKRTRKS SMMALHHHQN HNQYHHHQKL ESFKKVKVKN KVVSSKADSF DPEPVSSISD  180
ATKEEDVAFC LMMLSRDKWK KQDRHHHHEQ EQEKDDEVER STEDTDDSEE HLINLPRTRT  240
ARGKNKCETC NKVFKSYQAL GGHRASHKKI KALNANPIYK PELEQENYNV AGNSSSVAER  300
KIHECPVCFR VFSSGQALGG HKRSHVMSGS AAEASNSSPP LKSLSKLSDS LIDLNLPAPF  360
DDDDISQIEL SAVSDSEFVN HV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038734.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345136.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A498KGK90.0A0A498KGK9_MALDO; Uncharacterized protein
STRINGXP_009345136.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-39C2H2-like zinc finger protein