PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr038803.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

ZF-HD

Protein Properties

Length: 202aa MW: 21905.2 Da PI: 8.306

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr038803.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	87.1	1.9e-27	10	62	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +YkeCl+NhAaslG++a+DGCgEf+ + ++++ +l+C ACgCHRnFHRr + Pbr038803.1 10 NEVYKECLRNHAASLGSYATDGCGEFTLD---HASPGGLQCVACGCHRNFHRRVTY 62 678***********************8...5689***************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.1E-22	12	61	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-16	13	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.8E-22	13	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.234	13	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.03E-15	111	181	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-28	114	182	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-28	124	182	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEGDHDPNTN EVYKECLRNH AASLGSYATD GCGEFTLDHA SPGGLQCVAC GCHRNFHRRV 60 TYSATSSQAA GGGRSGHHQH HVIMSCSSRG RDPAENIITQ DQLIDYNAGG GGSPDSGERM 120 SSGKKRVRTK FTAEQKEKML AFAEKLGWKL LRKDLEDEIE RFCKSVGVSR QVFKVWMHNH 180 KNLSSSSTSA STGNASSLTT Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-21	125	187	18	79	ZF-HD homeobox family protein
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr038803.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009360029.1	1e-150	PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBL	A0A314UWY9	1e-106	A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11
STRING	XP_009360029.1	1e-150	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	1e-40	zinc finger homeodomain 1