PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038828.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-X1
Protein Properties Length: 1159aa    MW: 125696 Da    PI: 8.0417
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038828.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.22.7e-06346362319
     zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                  +H+C+++CH GpC+pC+
  Pbr038828.1 346 RHRCERTCHVGPCDPCQ 362
                  8***************6 PP
2zf-NF-X1201.5e-06408425118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C++ CH+GpC+ C
  Pbr038828.1 408 CGNHSCSEVCHPGPCGDC 425
                  ****************99 PP
3zf-NF-X126.11.8e-08466483118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+Cq+ CH+G+CppC
  Pbr038828.1 466 CGMHQCQEVCHTGDCPPC 483
                  ****************** PP
4zf-NF-X117.31.1e-05562579118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C++lCH G CppC
  Pbr038828.1 562 CGQHSCESLCHSGHCPPC 579
                  ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.76174235IPR019787Zinc finger, PHD-finger
SuperFamilySSF578506.53E-7176236No hitNo description
PROSITE patternPS013590177232IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.421177233IPR001841Zinc finger, RING-type
CDDcd060082.64E-5266327No hitNo description
SMARTSM004380.023289307IPR000967Zinc finger, NF-X1-type
PfamPF014228.7291306IPR000967Zinc finger, NF-X1-type
CDDcd060086.28E-11334382No hitNo description
SMARTSM004385.8E-4344363IPR000967Zinc finger, NF-X1-type
PfamPF014222.0E-4346361IPR000967Zinc finger, NF-X1-type
CDDcd060081.81E-10398441No hitNo description
SMARTSM004384.4E-5408427IPR000967Zinc finger, NF-X1-type
PfamPF014221.3E-4408425IPR000967Zinc finger, NF-X1-type
CDDcd060081.63E-13456502No hitNo description
SMARTSM004389.6E-6466485IPR000967Zinc finger, NF-X1-type
PfamPF014227.1E-7466483IPR000967Zinc finger, NF-X1-type
SMARTSM00438270524558IPR000967Zinc finger, NF-X1-type
PfamPF0142219524535IPR000967Zinc finger, NF-X1-type
CDDcd060082.23E-8552595No hitNo description
SMARTSM004380.002562581IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4562579IPR000967Zinc finger, NF-X1-type
CDDcd060082.22E-6609657No hitNo description
SMARTSM004380.023619637IPR000967Zinc finger, NF-X1-type
PfamPF014224619636IPR000967Zinc finger, NF-X1-type
SMARTSM004380.097672692IPR000967Zinc finger, NF-X1-type
PfamPF014220.16672691IPR000967Zinc finger, NF-X1-type
CDDcd060084.54E-5700749No hitNo description
PfamPF0142284704726IPR000967Zinc finger, NF-X1-type
SMARTSM004380.048711732IPR000967Zinc finger, NF-X1-type
PfamPF014243.2E-5843907IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.7E-5946997IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MSSHVRNERR DRSRFPAQPA AQPTQPARRE WVPRGSNPTI ATAAVNPPPQ VDPNNLNGNV  60
SQPNSRFNPN NQNGNVTQPN LRFNPNNLNG SVSQPTPRFN LDNPNSNVSH PNHSSVPSEI  120
RPHRGGNNGV RGQGRLVNHR RERGRNDNQE EKGLMDSNLP QLVQEIQDKL TKGTVECMIC  180
YDMVRRSAPV WSCSSCYSIF HLACIKKWAR APTSIDMSAE KNQGFNWRCP GCQSVQLTSS  240
KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKQLEREVPG KGVSKDDLCP HVCVLQCHPG  300
PCPPCKAFAP PRLCPCGKKI ITTRCSDRTS VLTCGQHCNK LLDCWRHRCE RTCHVGPCDP  360
CQVLVDASCF CKKKVEVVLC GDMTVKGEVK AEDGVFSCSS TCGKMLSCGN HSCSEVCHPG  420
PCGDCNLMPS KIKTCNCGKT SLQEERQSCL DPIPTCSQLC GKSLPCGMHQ CQEVCHTGDC  480
PPCLVEVTQK CRCGSTSRTV ECFKTTMENE KFTCDKPCGQ KKNCGRHRCS ERCCPLSNSN  540
NALSGDWDPH FCSMPCGKKL RCGQHSCESL CHSGHCPPCL DTIFTDLTCA CGRTSIPPPL  600
PCGTPPPSCQ LPCSLPQPCG HTSSHSCHFG DCPPCSVPVA KECIGGHVVL RNIPCGSRDI  660
KCNKLCGKTR QCGMHACGRT CHPPPCDTSC SAEQGSKTSC GQICGAPRRD CRHTCTSLCH  720
PYASCPDSRC DFPITITCSC GRMTATVPCD SGGSNASFKA DTVYEASVIQ RLPAPLQPIE  780
STGKKIPLGQ RKLMCDDECA KMERKRVLAD AFDIAPPNLD ALHFGESSAV SELLSDLLRR  840
DPKWVLSVEE RCKYLVLGKS RGATSGLKVH VFCPMLKEKR DVVRMIAERW KLAVQAAGWE  900
PKRFIVVHVT PKSKAPTRIL GVKGTTTVSA PQPPAYDYLV DMDPRLVVSF PDLPRDADIS  960
ALVLRFGGEC ELVWLNDKNA LAVFNDPARA ATAMRRLDNG ALYHGAIVVH SNGSASMAAS  1020
GSNAWGGLGT TKEGGASAVL RGNPWKKAVT RESGWREDSW GEEEWSGSST DAQANVWNKE  1080
VPIAASVNRW SVLDSDTALG SSASSPRVED SRKQPLGPPN LGLESKASGS SSSSTLAGQP  1140
VGVIADTPEV DDWEKAYE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038828.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503787.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A498I5I70.0A0A498I5I7_MALDO; Uncharacterized protein
STRINGXP_009360168.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1