PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038976.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family DBB
Protein Properties Length: 200aa    MW: 22027 Da    PI: 5.9365
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038976.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC++C ++ H
  Pbr038976.1  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                 7**************************998 PP
2zf-B_box26.71.1e-085291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Pbr038976.1 52 DVPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                 5789**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
SMARTSM003362.5E-8147IPR000315B-box-type zinc finger
CDDcd000213.61E-6333No hitNo description
PfamPF006434.5E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501198.7455196IPR000315B-box-type zinc finger
SMARTSM003362.2E-95196IPR000315B-box-type zinc finger
PfamPF006439.8E-75285IPR000315B-box-type zinc finger
CDDcd000211.01E-65684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAN RHVRVGLATP SDVPCCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGNKLGR GLQPLDQKKV  120
RRDENQLPDV KPKEGEHNHN ISPIAVLDNN IDGDYKIDNT LIDLNTRPQR IREQASNNQE  180
QGVGVLNGVN DESVSVVPV*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345267.11e-145PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM58e-77BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A498JUK31e-121A0A498JUK3_MALDO; Uncharacterized protein
STRINGXP_009345267.11e-145(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-79DBB family protein