PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039074.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 438aa    MW: 49445.3 Da    PI: 8.5325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039074.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33.2e-21953145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kr en+  rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk
  Pbr039074.1  9 KRLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGK 53
                 689****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.137153IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-25294IPR002100Transcription factor, MADS-box
CDDcd002669.36E-26281No hitNo description
PRINTSPR004042.0E-17323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KANELSILCD IDIILLMFSP TGKPSLCCGK  60
RSIEDVIAKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NIQEFLGTSS QTIEDLSNQS  120
SLLQTQLSEI KKRLSCWTSP DKINSVEQLG HMEDSLRESL NQIRTHKENL QKQQLMSIKC  180
TSQFQNGLHI PFSMNAEQQL QPLSWIPTNE SRHIVLPEDT TLLPHRDLEC SASSSFGSYS  240
GYLGTGKNPE ISTSGQENGI LNDLTRTAPL NLQLGGHIPY LPYNLNMLTD TKFQPPAEMS  300
PQENPVEYQV NGSFEAPRPE FYPTQHNWAS TSGPCAVTMF DEHLYSQKYR CSAEFFGSLR  360
PLHVFGCQGF QWQFRTLPSL ASPLSNLSSV YTPQNISWNH KATIEGIQGL VSSFCKAMLI  420
FSASFQFYRR YGFGLHF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039074.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360324.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X3
SwissprotQ1PFA41e-118AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A251R4450.0A0A251R445_PRUPE; Uncharacterized protein
STRINGXP_009360320.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.23e-88AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]