PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039143.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 335aa    MW: 37660.3 Da    PI: 4.3632
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039143.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-1990144357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  k++++t++q++ Le+ Fe+++++  e++ +LAk+lgL+ rqV +WFqNrR ++k+
  Pbr039143.1  90 KKRRLTANQVQFLEKNFESENKLEPERKVQLAKELGLQPRQVAIWFQNRRVRYKN 144
                  56689************************************************95 PP
2HD-ZIP_I/II126.41.3e-4090180292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrl+++qv++LE++Fe+e+kLeperKv+la+eLglqprqva+WFqnrR R+k+kqlEkdy++Lk++yd+lk + ++L ke+e+L++e++
  Pbr039143.1  90 KKRRLTANQVQFLEKNFESENKLEPERKVQLAKELGLQPRQVAIWFQNRRVRYKNKQLEKDYDSLKASYDKLKVDADNLLKENESLKNEID 180
                  9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1977147IPR009057Homeodomain-like
PROSITE profilePS5007117.34685145IPR001356Homeobox domain
SMARTSM003894.0E-1787149IPR001356Homeobox domain
CDDcd000863.88E-1788146No hitNo description
PfamPF000463.2E-1690143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1992153IPR009057Homeodomain-like
PRINTSPR000311.2E-5116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5125141IPR000047Helix-turn-helix motif
PfamPF021836.5E-15145186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASGKLYGSS SSSSSADMKV TFRNEKRPRS SDALESLWIP NPSSSFYGSN SMVNFENVSG  60
GDSLDMSFFQ PKEENEDEDY DGSYLHQPGK KRRLTANQVQ FLEKNFESEN KLEPERKVQL  120
AKELGLQPRQ VAIWFQNRRV RYKNKQLEKD YDSLKASYDK LKVDADNLLK ENESLKNEID  180
SIKDILLSRE KGNPGKGDSD SQDAINTSDL EPRNTILNAG SENVTKVAMV LCKQEDASSA  240
KSDVFDSDSP HCTENHSSLL EPADSSHVFE PADQSDFSQD EDDDLGKTLL PPPPPQLLKL  300
EDCCYDYITP PSSSNFGYIP LDDQDQQPFC FWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRVRYKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700715e-88KC770071.1 Pyrus pyrifolia microsatellite TXY189 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360404.10.0PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A498IC730.0A0A498IC73_MALDO; Uncharacterized protein
STRINGXP_009360404.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.12e-40HD-ZIP family protein