PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039302.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 326aa    MW: 36171.7 Da    PI: 6.7936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039302.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20134183255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Pbr039302.1 134 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 183
                  59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-34133193No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32134192IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-23134192IPR016177DNA-binding domain
SMARTSM003806.7E-39134197IPR001471AP2/ERF domain
PROSITE profilePS5103223.235134191IPR001471AP2/ERF domain
PRINTSPR003672.9E-11135146IPR001471AP2/ERF domain
PfamPF008471.4E-14135183IPR001471AP2/ERF domain
PRINTSPR003672.9E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAKAIDLYSS STMTPDLSDL LGEDQLMKAL MPSMKSASST SPSTSYSYPP QNNQNFNLYP  60
DFCSSPMISQ AGAIGLNQLI PSQILQIQSQ MIRQQHQQKQ QISAFASSAA YLKLLSTKAI  120
PMKKADTPSK LTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDKAAFK  180
LRGDFARLNF PHLKQQGAHV SGAFGHYKPL HSSVDAKLQA ICQSLAANSM KQGNTGEPCS  240
VAETKPVVSA PLETRMDDSF KTELKSEWEA FLSSSSSPFW SDRSDESSTP ESDITFLDFS  300
DSQWDEAENF GLEKYPSVEI DWSAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21133191160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324580.0GU732458.1 Malus x domestica AP2 domain class transcription factor (AP2D34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345480.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like isoform X2
TrEMBLA0A1P8VHT70.0A0A1P8VHT7_9ROSA; DREB6.5
STRINGXP_009345480.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-56related to AP2 4