PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039561.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23813.8 Da    PI: 7.9402
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039561.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF368.9e-121563149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ien+    v+fskRr g+ KKA  +  L + ev ++ifs++gk + y
  Pbr039561.1 15 KKIENEEVLLVSFSKRRSGVYKKATDMIALSGGEVGIVIFSPSGKPFSY 63
                 689*****************************************96655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.409767IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-18766IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-22895IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-13929IPR002100Transcription factor, MADS-box
PfamPF003191.5E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEGKQTRGRQ KIEMKKIENE EVLLVSFSKR RSGVYKKATD MIALSGGEVG IVIFSPSGKP  60
FSYGHPSVDY VINRFMNQNP PENDDYTHQF MEAHRQMKIS EAMEQYNELL DPLEAVKERQ  120
KSLLRKSRTR RNQEHLWWSV PIEELRVDEL KQIHESMAEL HMTISKHLKE RSSSSNIFGA  180
SSSGSVQQTN PNFDADPSGT GSYAFPYG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039561.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360965.11e-155PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A498ISW01e-135A0A498ISW0_MALDO; Uncharacterized protein
STRINGXP_009360965.11e-154(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-36AGAMOUS-like 62