PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039562.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19534.6 Da    PI: 10.6089
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039562.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.6e-221053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  +e++s rqvtfskRr+g++KKA+EL +LC+ae+av++fs+ gk
  Pbr039562.1 10 VVEDSSSRQVTFSKRRTGLFKKANELATLCGAEIAVLVFSPGGK 53
                 689**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.235161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-29173IPR002100Transcription factor, MADS-box
CDDcd002652.99E-34273No hitNo description
PRINTSPR004041.1E-20323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-261157IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGRRKIEMKV VEDSSSRQVT FSKRRTGLFK KANELATLCG AEIAVLVFSP GGKPFSFGHP  60
NVESIADRFL NQECPKSKFR VSKNDEKAGR LNQQLEDMES QLEAEKKRGI VLDKAVLKAM  120
GLPLKSKPPS FRELSRADLR KMKASLEALR ENVKEKASEV EASSSLLLLA NGRRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039562.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360966.11e-123PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A498IW071e-116A0A498IW07_MALDO; Uncharacterized protein
STRINGXP_009360966.11e-122(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-39AGAMOUS-like 29