PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039624.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 894aa    MW: 98921.2 Da    PI: 6.608
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039624.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.5e-24127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Pbr039624.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Pbr039624.1 221 LLLGIRRA 228
                  9****997 PP
2Auxin_resp116.13e-38253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++ + ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Pbr039624.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLATYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                  79*********************************956689****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-21126227No hitNo description
PROSITE profilePS5086312.548127229IPR003340B3 DNA binding domain
SMARTSM010192.0E-24127229IPR003340B3 DNA binding domain
PfamPF023623.5E-22127228IPR003340B3 DNA binding domain
PfamPF065071.4E-33253336IPR010525Auxin response factor
PROSITE profilePS5174524.701760844IPR000270PB1 domain
SuperFamilySSF542777.19E-7762835No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MRLSSAGFSP QSQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
ADARIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDG YLPAGLGSPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL ATYIKAVYHT CISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGDRQPR VSLWEVEPLT  360
TFPMYPSTFP LRLKRPWPPG LPSFSGMRDD DLGMNSQLMW LQGNNGDRGM QSLSFSGMGI  420
TPWMQPRLDA SMIGLQPDMY QAMAAAALQE MRAVDPSRPL PTSHLQFQQP QSLPNRSAAL  480
MQPQMVQVSQ SQQPFLQGVQ EHHRQSQPQA QTQSHLLQQQ LQHQNSFSNQ QQRQLVDHQQ  540
IPSAVSSMTQ FASASQSQSP SLQVVTSLCQ QESFSDSNGN PATSTILSPL HSLMGSFPQD  600
ESSHLLTLPR TNQLISSDGW PSKRAAIDLL SSGVSQCILP RAEQLGPPHI TMSQNSISLP  660
PFPGRECSLD QEGGTDPQSH LLFGVNIESS PLIMQSGMSN LRGVGSNCDT TTLHFPSSNY  720
MSTGGTDFSL QTAVTPSSCI DESGFLQSPE NADHGDPLKR NFVKVHKSGS FGRSLDITKF  780
NSYQELRNEL ARMFGLEGEL DDPVRSGWQL VFVDRENDVL LLGDDPWPEF VNSVWCIKIL  840
SPQEVQQMGK RGLELLKSVP NQRLPNNSCD DYGSRQDSRN LSSGITSVGS LEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039624.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360948.10.0PREDICTED: auxin response factor 6
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLA0A498IXP50.0A0A498IXP5_MALDO; Auxin response factor
STRINGXP_009360948.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]