PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039693.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25305.7 Da    PI: 6.9425
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039693.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n + rqvtfskRr g++KKAeELSvLCda++a+iifsstgkl+ey+s
  Pbr039693.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                 68***********************************************86 PP
2K-box53.21.3e-18921721999
        K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   ++++L kei    +++R++ Ge+++ Lsl+eLqqLe+ Le +l  + +kK+e ++++i++lq+   +l een++Lr+++ 
  Pbr039693.1  92 SNYSRLSKEIAAKSHQLRQMRGEEIQGLSLEELQQLEKSLEAGLGGVVEKKSEKIMKEINDLQRNAMQLTEENERLRQQVV 172
                  67999*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.445161IPR002100Transcription factor, MADS-box
CDDcd002653.36E-39275No hitNo description
SuperFamilySSF554555.89E-31375IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.87587177IPR002487Transcription factor, K-box
PfamPF014863.7E-1792171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADIALIIFSS TGKLFEYASA  60
SMKEILERHN LHSKNLDKLE QPSLELQLVE NSNYSRLSKE IAAKSHQLRQ MRGEEIQGLS  120
LEELQQLEKS LEAGLGGVVE KKSEKIMKEI NDLQRNAMQL TEENERLRQQ VVEKSNGRRL  180
VHVDSENLIT EEGQSSESVT NLCKSNSGPQ DYDSSVTSLK LGCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-22169169MEF2C
5f28_B7e-22169169MEF2C
5f28_C7e-22169169MEF2C
5f28_D7e-22169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039693.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0047300.0LC004730.1 Malus domestica MdJb mRNA for JOINTLESS like protein MdJOINTLESSb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315811.11e-160MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-109JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0E4AZI01e-158A0A0E4AZI0_MALDO; JOINTLESS like protein MdJOINTLESSb
STRINGXP_009345714.11e-156(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]