PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039974.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family E2F/DP
Protein Properties Length: 359aa    MW: 39792.7 Da    PI: 6.0651
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039974.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.84.2e-2489177271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlne......vakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+ne      va+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Pbr039974.1  89 NGRGLRQFSMK---VCEKVESkGRTTYNEvgwflqVADELVAEfadpsnavtspdqqqdDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 177
                  789********...*****999******833333369999999****************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.7E-1212355IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.8E-4484182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.1E-3088177IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.0E-2290177IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.99E-1891178IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.92E-41182291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-40183303No hitNo description
SMARTSM011388.5E-67184353IPR014889Transcription factor DP, C-terminal
PfamPF087815.2E-39185303IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGTRSQQQPG RERVGQDDDD MAGGQSVSMS GSVGSPSSRS EQTMATPVGD NSFLRLNHPD  60
VHGDDAGSQG AVGSKKKKRG QRAVAGDKNG RGLRQFSMKV CEKVESKGRT TYNEVGWFLQ  120
VADELVAEFA DPSNAVTSPD QQQDDEKNIR RRVYDALNVL MAMDIISKDK KEIQWKGLPR  180
TSLNDIEELK TERMGLRNRI EKKAAYLQEL EEQYVGLQNL IQRNEQLYHS GDAPSGGVAL  240
PFILVQASFL LKTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCNRQQGD  300
DATQNLIVDG GEGCSMSDMY QPQIPLSSML NTPIRPPPMS PPLPGILKAR VKHEHHGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-3382182193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039974.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3817575e-39FQ381757.1 Vitis vinifera clone SS0ABG85YD15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362815.10.0transcription factor-like protein DPB isoform X5
SwissprotQ9FNY21e-150DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A498JIJ40.0A0A498JIJ4_MALDO; Uncharacterized protein
STRINGXP_009361170.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-143Transcription factor DP