PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040002.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 235aa    MW: 26438.8 Da    PI: 9.0133
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040002.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.28.4e-3616114199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  aCaaCk++r+kC ++C+lapyfp++++++f +vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv Ga+g ++ ++ +l++ k++ ++ +
  Pbr040002.1  16 ACAACKHQRKKCHAGCILAPYFPSDRTREFLAVHKVFGVSNVTKMVKNVEEPNRRKVAESLVWEALCRQKDPVLGAYGEYRMVSDELKRYKQQQNREN 113
                  7******************************************************************************************9988766 PP

       DUF260  99 e 99 
                  +
  Pbr040002.1 114 H 114
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.34815116IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3416110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQRTNNNGTA GSTQPACAAC KHQRKKCHAG CILAPYFPSD RTREFLAVHK VFGVSNVTKM  60
VKNVEEPNRR KVAESLVWEA LCRQKDPVLG AYGEYRMVSD ELKRYKQQQN RENHTVPLQV  120
QKGLCFNKSL SDLVGNWNGG ITNGITNVNN SGYLRDNDDV IPDSAPFGYP LNCEQQSHEK  180
VVKQVKMVDS VVVPLHQQQQ HYSVNNINQR YYLTGQFNEI IGKRIEGTIW EGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-2291105105LOB family transfactor Ramosa2.1
5ly0_B8e-2291105105LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377048.11e-169LOB domain-containing protein 2-like
TrEMBLA0A498JIH21e-168A0A498JIH2_MALDO; Uncharacterized protein
STRINGXP_008377048.11e-169(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.18e-43LOB domain-containing protein 2