PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040074.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26775.9 Da    PI: 7.0499
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040074.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.84.9e-203486456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  ++f++eq+  Le+ Fe ++++  +++ +LA++lgL+ rqV +WFqNrRa++k
  Pbr040074.1 34 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 86
                 468*************************************************9 PP
2HD-ZIP_I/II123.78.8e-4033124293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  + rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+dy++L++ yd+l+++ e+L++e+++L  +l++
  Pbr040074.1  33 NTRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYRSLREDYDKLASRFESLKEEKQSLLMQLQK 124
                  579************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-202289IPR009057Homeodomain-like
PROSITE profilePS5007117.9932888IPR001356Homeobox domain
SMARTSM003891.0E-193192IPR001356Homeobox domain
CDDcd000861.99E-163289No hitNo description
PfamPF000462.5E-173486IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-203495IPR009057Homeodomain-like
PRINTSPR000313.3E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000313.3E-66884IPR000047Helix-turn-helix motif
PfamPF021835.6E-1488128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERRKEECYE EENLDYGIEP QSAMKRKKNK SKNTRRFSDE QISLLESIFE ADSKLEPRRK  60
VQLARELGLQ PRQVAIWFQN RRARWKSKQI EQDYRSLRED YDKLASRFES LKEEKQSLLM  120
QLQKLHDLVG TSRAGAPTED SLANQTADGS SYKDGNCKTT ARVRLEEALE KTGAIDKHTS  180
NDVGGEFGDE RHELLNIGQL DASVTPLGLH RLDSGNILFD RCNSHWLNFW T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12435KRKKNKSKNTRR
28088RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040074.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361303.11e-171PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLD9ZJ091e-157D9ZJ09_MALDO; HD domain class transcription factor
STRINGXP_009361303.11e-171(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-41homeobox 12