PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040195.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 244aa    MW: 26961.8 Da    PI: 10.6157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040195.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08154194954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pbr040195.1 154 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 194
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-11147199No hitNo description
SuperFamilySSF474592.88E-14149203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-14151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6155194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MQKQQHSPDQ FCSDSYPNNN NNNPTFPEID FNWVSNPNPN NHESISPVPI FHNSNAVPPQ  60
PALLNPALPS SVSFMGNPIQ EPLTPRLSKP SGISPTGLSV LPSTSYEKRN SMAAMREMIF  120
RIAAMQPIQI DPEAVKPPKR RNVKISKDPQ SVAARHRRER ISEKIRILQR LVPGGTKMDT  180
ASMLDEAIHY VKFLKKQVQT LERAGADRPV GLGFQGSGSQ MGNVNYSGFL RPSQLVGSVQ  240
MLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040195.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345962.11e-179PREDICTED: transcription factor HEC2-like
TrEMBLM5VUU41e-125M5VUU4_PRUPE; Uncharacterized protein
STRINGXP_009345962.11e-178(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-49bHLH family protein