PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr040273.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 354aa MW: 39084.2 Da PI: 9.774

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr040273.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.4	5.2e-15	16	90	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf....erspkqCkekwenlnkrykkikegekkr 71 +Wt++e +aLi ++++++ +l+r++lk ++W++v++ + +r + ++qC++k+e+l++r++ +ke+++ + Pbr040273.1 16 CWTHDESHALISLYKDRWLALGRSNLKSADWDSVASSVNDRCPlvspPKPAIQCRHKMEKLRRRFRTEKERASTH 90 8***********************************55544122266779****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-15	15	99	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MASPTEPKPR KFPPPCWTHD ESHALISLYK DRWLALGRSN LKSADWDSVA SSVNDRCPLV 60 SPPKPAIQCR HKMEKLRRRF RTEKERASTH IGPAAFFSSF DLFQPMIDLE CDSPLVFGSN 120 PDPENRIAVE YGGGFRVRND ESFRYLADSD PNLSDPDETT SKGSGFGGGF RVKNPVRGPN 180 SGVSAGFDRY GSRGSDGGSG FPVKSLGDRN FWPSDFRSKS YGKSNDKFNP KLISKRSGSN 240 GVGSGSRFNQ KFKGSLHSNG VGIEDLGGSS SGKGMDDPIE AMASSIEFLG EVFVKMEKRK 300 MEMAGEMAKM RMKMEMKQNQ LIMESQKQMV DACVNALWET KKKKMKVVSL DDS*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MASPTEPKPR KFPPPCWTHD ESHALISLYK DRWLALGRSN LKSADWDSVA SSVNDRCPLV  60
SPPKPAIQCR HKMEKLRRRF RTEKERASTH IGPAAFFSSF DLFQPMIDLE CDSPLVFGSN  120
PDPENRIAVE YGGGFRVRND ESFRYLADSD PNLSDPDETT SKGSGFGGGF RVKNPVRGPN  180
SGVSAGFDRY GSRGSDGGSG FPVKSLGDRN FWPSDFRSKS YGKSNDKFNP KLISKRSGSN  240
GVGSGSRFNQ KFKGSLHSNG VGIEDLGGSS SGKGMDDPIE AMASSIEFLG EVFVKMEKRK  300
MEMAGEMAKM RMKMEMKQNQ LIMESQKQMV DACVNALWET KKKKMKVVSL DDS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr040273.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009346164.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A498JYG9	0.0	A0A498JYG9_MALDO; Uncharacterized protein
STRING	XP_009346164.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-24	Trihelix family protein