PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040573.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 583aa    MW: 64647.5 Da    PI: 5.9875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040573.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.21.1e-1292125811373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+elL++cA a+s+++    ++l++  +  +s  g+p+qRl ay++e+L ar   s+ ++y+al+++e +   s + l+++++++e++P+lkf++++a
  Pbr040573.1 212 LKELLIACAGALSNNEVDSFEKLIEIARGAVSIGGEPIQRLGAYLVEGLVARKEASGANIYHALRCREPE---SNDLLSYMQILYEICPYLKFGYMAA 306
                  5799*****************************************************************9...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + +++++p+ef+  v     d++ ++L
  Pbr040573.1 307 NGAIAEACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKhaRGDGLEAVGRRLKAISDKFNIPVEFHG-VPVFAPDVTRDML 403
                  ***************************************************99988999*************************.688899******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ lqlh+++desv+ +++rd +L++v+sl+Pkv ++veqe+++n+++F++rf+e+leyy a+f+s++++lpr+s+eri+vE+++l+r
  Pbr040573.1 404 DVRPGEALAVNFPLQLHHTPDESVDENNPRDGLLRTVRSLNPKVTTLVEQESNTNTTPFFNRFVETLEYYLAMFESIDVTLPRNSKERINVEQHCLAR 501
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ + +llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  Pbr040573.1 502 DIVNVIACEGKERVERHELFGKWKSRLTMAGFQQYPLSSYVNSVIGSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 581
                  *************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.8186563IPR005202Transcription factor GRAS
PfamPF035143.7E-127212581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDQHFRFRAT GAGLSHTAPL PTVQSLPKRL LGTLKFDIKN SSNTPFSTDF DSDTLTTLSN  60
SQEQHSSPEN LSGATPSGTS SFETNSYVNR LSLSPSVDCS RDSLQVYSGR ASSLTDANSS  120
QNIKQTLQEL ESALMGPDDE EEVTTANTSS GESSRRQTQR SMSWIQEHQG SNPVQWQTSF  180
VSRQRQLGEA QFEKRHKVID EASLKGLPAS NLKELLIACA GALSNNEVDS FEKLIEIARG  240
AVSIGGEPIQ RLGAYLVEGL VARKEASGAN IYHALRCREP ESNDLLSYMQ ILYEICPYLK  300
FGYMAANGAI AEACRNEDRI HIIDFQIAQG TQWVTLLQAL AARPSGAPHV RITGIDDPVS  360
KHARGDGLEA VGRRLKAISD KFNIPVEFHG VPVFAPDVTR DMLDVRPGEA LAVNFPLQLH  420
HTPDESVDEN NPRDGLLRTV RSLNPKVTTL VEQESNTNTT PFFNRFVETL EYYLAMFESI  480
DVTLPRNSKE RINVEQHCLA RDIVNVIACE GKERVERHEL FGKWKSRLTM AGFQQYPLSS  540
YVNSVIGSLL RCYSEHYTLV EKDGAMLLGW KDRNLISASA WH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-612165828375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040573.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346476.20.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
RefseqXP_018500722.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A498K7Y70.0A0A498K7Y7_MALDO; Uncharacterized protein
STRINGXP_009346474.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-172GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]