PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040686.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 241aa    MW: 25716.8 Da    PI: 9.0561
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040686.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.6e-323389360
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                  vrY+eClkNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e+e e
  Pbr040686.1 33 MVRYRECLKNHAIGIGGHALDGCGEFLAA-GDEGTLDALKCAACNCHRNFHRKEPEAE 89
                 79**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.7E-293486IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-233588IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-283585IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.0493685IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.53E-22161236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-33164236IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27175231IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGPTGEGAAP SARKRGTAAT PNSTTTTTAV SAMVRYRECL KNHAIGIGGH ALDGCGEFLA  60
AGDEGTLDAL KCAACNCHRN FHRKEPEAEL IHHQQGAGGS HLLHHHHHPH QFSSGYYRPP  120
PPSGYLITSP HARPTLALPA ASGGGGGSHS REEGEDVSNP SSSGGGGGGG FGMSKKRHRT  180
KFTQEQKEKM LEFAEKVGWR IQKHDEAAIE EFCSETGVKR HVFKVWMHNN KHTLGKKLVP  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-271762331875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040686.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506789.11e-178PREDICTED: zinc-finger homeodomain protein 2-like isoform X1
SwissprotA2Z2592e-71ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A498JA661e-125A0A498JA66_MALDO; Uncharacterized protein
STRINGXP_009373696.11e-172(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-58homeobox protein 22