PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040923.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YB
Protein Properties Length: 104aa    MW: 10404.4 Da    PI: 7.7681
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040923.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB33.21.2e-101277197
        NF-YB 71 latlGfedyveplkvylkkyrelegek 97
                 ++tlGfe+yveplkvyl+++re+egek
  Pbr040923.1  1 MTTLGFEEYVEPLKVYLQRFREMEGEK 27
                 89***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-8136IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MTTLGFEEYV EPLKVYLQRF REMEGEKSSV AARDKDGSGG GIGGVGYEGG GGGSGGGSSG  60
GAGVYWQQQH QGHVYGGSGF HQMGVSGVGM GKSGPGSSMG RPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040923.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500735.11e-64PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBLA0A220D3C93e-41A0A220D3C9_MALDO; Nuclear transcription factor Y subunit B-3-like
STRINGXP_009346556.14e-64(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.18e-14nuclear factor Y, subunit B3