PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040944.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 251aa    MW: 29198.4 Da    PI: 8.9871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040944.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0783127554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h ++Er RR++ ++++  L ++lP       ++++K  i+++A+  I++L
  Pbr040944.1  83 HMINERMRREKQKHSYLALHSMLPAG-----TRNDKNRIVQMATMNIQQL 127
                  7899********************97.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-974139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.84278127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-482132No hitNo description
PfamPF000102.4E-483127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-683142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.005784133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDRYILKALE GEFLWYDESP PVVQNQSAFV PYTNRPNSNQ LPNGVTKSMN MTMRMLQFLR  60
KSWQPATARN EAGDDSKERG FRHMINERMR REKQKHSYLA LHSMLPAGTR NDKNRIVQMA  120
TMNIQQLKRS EEELRKKNME LETLLVENEK ERVKRAKIKL KVANPTSGID SMLEVLKCLQ  180
HLGLKARNIS SNFSLEEFSA ELEIESKIGA AEIEEYVQET LYEAERKLRF PFPGSREEYC  240
ASIDTPFRFD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040944.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346437.10.0PREDICTED: transcription factor bHLH92-like
TrEMBLA0A498I7U91e-136A0A498I7U9_MALDO; Uncharacterized protein
STRINGXP_009346437.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.18e-42bHLH family protein