PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041150.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 259aa    MW: 29773.1 Da    PI: 7.9055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041150.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.42.4e-821257120373
         GRAS 120 sqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvl 208
                  ++G+QWp+L+qaL +R+     ++pp+lRiT+ g+    + + l +tgerL +fA++lg+ f+f++l    +++  + +++++L ++++E+laVn+vl
  Pbr041150.1   1 MHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTGERLLRFAQSLGLAFQFHPLvlnnTSQPSDLISPSTLGLHQNEVLAVNCVL 94 
                  58***************87777779**********....9***************************555444456778******************* PP

         GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                   lh+l+ ++         +L+ +ksl+Pkv++++++ea+hn++ F++rf+eal++y a+fdslea+lp++s+er +vE+  +grei++vv  eg++r+
  Pbr041150.1  95 YLHTLVTDDSRD---LFLFLQKIKSLNPKVFTIANKEANHNNHLFFNRFVEALDHYGAVFDSLEATLPPNSRERLVVEEW-FGREIKDVVGIEGEKRK 188
                  *****9444433...4589***********************************************************97.***************** PP

         GRAS 307 erhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +rhe++e+ W+  l++aGF++vpls +a +qaklllr ++ s+gy++   ++s++lgW++rpL+svS+W
  Pbr041150.1 189 QRHESYETfWEVVLRRAGFENVPLSPFALSQAKLLLRLHYpSEGYQLRIFNDSFFLGWQNRPLFSVSSW 257
                  *****9977************************************************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.1E-801257IPR005202Transcription factor GRAS
PROSITE profilePS5098536.4721237IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MHGVQWPPLM QALVERSYNS PLHPPPTLRI TATGRDLTLL LRTGERLLRF AQSLGLAFQF  60
HPLVLNNTSQ PSDLISPSTL GLHQNEVLAV NCVLYLHTLV TDDSRDLFLF LQKIKSLNPK  120
VFTIANKEAN HNNHLFFNRF VEALDHYGAV FDSLEATLPP NSRERLVVEE WFGREIKDVV  180
GIEGEKRKQR HESYETFWEV VLRRAGFENV PLSPFALSQA KLLLRLHYPS EGYQLRIFND  240
SFFLGWQNRP LFSVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-361257137377Protein SCARECROW
5b3h_D7e-361257137377Protein SCARECROW
5hyz_A5e-361258119375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041150.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3079590.0KC307959.1 Malus x domestica lateral suppressor protein (LAS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374432.20.0PREDICTED: scarecrow-like protein 18
RefseqXP_018500733.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC53e-97SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A498INV50.0A0A498INV5_MALDO; Uncharacterized protein
STRINGXP_009346546.10.0(Pyrus x bretschneideri)
STRINGXP_009374432.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.15e-88GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]