PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041251.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 1119aa    MW: 123766 Da    PI: 6.7941
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041251.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.6e-22136237199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  Pbr041251.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 230
                  99*****************************9445444.38************************************************..5688889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Pbr041251.1 231 LLGIRRA 237
                  ****997 PP
2Auxin_resp116.52.3e-38262345183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFv++++k+ ka   +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+
  Pbr041251.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKHSQWRNLQ 345
                  79****************************9887766*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-43124265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-41129251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-18135227No hitNo description
PROSITE profilePS5086311.899136238IPR003340B3 DNA binding domain
PfamPF023623.1E-20136237IPR003340B3 DNA binding domain
SMARTSM010191.9E-22136238IPR003340B3 DNA binding domain
PfamPF065071.0E-33262345IPR010525Auxin response factor
PROSITE profilePS5174526.76510051089IPR000270PB1 domain
SuperFamilySSF542774.81E-710181083No hitNo description
PfamPF023096.5E-610531090IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MKPPANGAGA SVANCASNSC PGGENVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLLP VSSFDKDALL  120
RSDLALKTNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKHSQ WRNLQVGWDE STAGERRNRV  360
SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEDYDMDNL FKRTMPWLGD DMSMKDPQVL  420
PGLNLVQWMN LQQNSSTGNS MQPNYMHSYS GSAMENLAGA DLSRQLGLSA PQIPQMNNLQ  480
FNGQRPPQQV QQLDQLPKQP SSLSPLASMI QRQQQLGDNS QPPRQNSVNQ TLPLSQVQSQ  540
LLQPQTLAQN NSGVLQQQSS AQNHLQRNIP QNLQQHQQQQ QQHQQQIMGQ NQQQSFIQSQ  600
PPDQMNQQLQ HLSDNQLQFQ LLQKLQQQQQ SLLAQQALQH PAQQVQLQDQ QRQMFDMSQS  660
FSRPSPTQML DMPQMAPTSH PQSRTMPQQM TKNSHSQANV RFSQPPQQPK LQQQQSGMLP  720
EMSSHMGLPN TTTNHLSTVG SNMMTAVAGA GQSGITDEVP SCSTSPSTNN GPSVIQPLTN  780
NRSHRNSSIG EDIAQSATTI LSSGAIDRMP SHGNLMKDFQ HKSEVKPSVN IARNQSQGIL  840
APQAYMNGAA SQTDYLDTSS STTSVGLSQN DVHLQQNNAP LPFHPQSMLF REASQEVEVL  900
VDQRNNVPYG SNIDGQIGIP LNPDPMLAKG VVGLAKDFSN ALSSGGMLGN YENSKDAQVE  960
LSTSMVSQSF GVPDMTFNSI DSAINDSSFL DSGPWPPAPP FQRMRTYTKV YKRGAVGRSI  1020
DMTRYSNYDE LKQDLARRFG IEGQLEDRGR VGWKLVYVDH ENDVLLVGDD PWEEFVNCVR  1080
CIKILSPQEV QQMSLDGDFG GNAVLPNQAC SSSDGGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682936651388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041251.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362016.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A498I8J50.0A0A498I8J5_MALDO; Auxin response factor
STRINGXP_009362016.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19