PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041417.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HB-PHD
Protein Properties Length: 597aa    MW: 65747.7 Da    PI: 4.7464
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041417.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.92e-14453504556
                  SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +  +++L + F++n+yp+++++e LA++lg+  +qV+ WF N R  +k
  Pbr041417.1 453 RKLGEAATQRLSKSFKENHYPDRSMKESLAQELGIMAKQVSKWFENARHCWK 504
                  55667889****************************************9887 PP
2PHD36.89.1e-1367122151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ Cg+     +++++lCdg C++ fH+ Cl+++l se++p +   wlC+ C++k
  Pbr041417.1  67 FCAKCGSkdVSLQNDIILCDGaCDRGFHQLCLEPSLLSEDIPPDdeGWLCPGCDCK 122
                  6999**964444********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.2E-1357125IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.7E-1263122IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.93265122IPR019787Zinc finger, PHD-finger
PfamPF006283.7E-1067122IPR019787Zinc finger, PHD-finger
SMARTSM002494.5E-967120IPR001965Zinc finger, PHD-type
CDDcd155046.10E-2767119No hitNo description
PROSITE patternPS01359068119IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.9E-15422504IPR009057Homeodomain-like
SuperFamilySSF466899.84E-12435504IPR009057Homeodomain-like
PROSITE profilePS5007113.669446506IPR001356Homeobox domain
SMARTSM003893.1E-11448510IPR001356Homeobox domain
CDDcd000867.65E-11449504No hitNo description
PfamPF000467.1E-12454504IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MLTPVKVGKD PEKLKPEKEL QRATSEILRR KLKIRDLFQR LDSLCSEGMF PESLFDSEGQ  60
IDSEDIFCAK CGSKDVSLQN DIILCDGACD RGFHQLCLEP SLLSEDIPPD DEGWLCPGCD  120
CKVDCFDLLN ESQGTDLSVA DSWEKVFPEA AAAASGHNQE HTHGLPSDDS DDNDYDPDGS  180
ETDDEVQGEE SSSDDESKYA SASDGLETPK NNDEQYFGLP SDDSEDDDYN PDAPEVTDEL  240
KKESSSSDFT SDSEDLGASL DDNNMSAEDV ESPKSMSLDE SGPLRGSGKQ SSRHGQKKQP  300
LKDELLSLLE SGPGQGGAAP VSGKRHIERL NYKKLHDETY GNVRTDSSDD EEWNDTAGPR  360
KRKKVTTQAP MMSPNGDSSN VKNVMITNNI KHDLDENENT PKRTPRGSKN TPKRAHRKSK  420
VEDTSNLSNK SQKGSTQSAS TSEKGGSSRS TYRKLGEAAT QRLSKSFKEN HYPDRSMKES  480
LAQELGIMAK QVSKWFENAR HCWKVSLDKS AAGNGTPLPQ TNGKQLEQGD TPIGDSDRGG  540
AQNKELPRTD DRKRKAMTPN NRKRKRKSDD PDPENKTPET NRKGTGVMTR QRKSIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363RKRKK
2552566KRKAMTPNNRKRKRK
3561566RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041417.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346873.10.0PREDICTED: homeobox protein HAT3.1-like, partial
TrEMBLA0A498JR810.0A0A498JR81_MALDO; Uncharacterized protein
STRINGXP_009346873.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-99Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain