PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041453.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 363aa    MW: 39590.1 Da    PI: 9.6936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041453.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.35.9e-10204224121
         GATA   1 CsnCgttkTplWRrgpdgnkt 21 
                  Cs C ttkTplWR+gp+g+k 
  Pbr041453.1 204 CSDCSTTKTPLWRSGPRGPKV 224
                  *******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0014198240IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-5199222No hitNo description
PROSITE profilePS501149.222202221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-7202224IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.9E-7204224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTPPPYHNLS PPSPFNLELS GDHDLQYHHF NLEPQTSFSS SLSSPLFLTP AQVQGRSDDH  60
YREPQQFQFQ LLEADHNIVP YGGSRDHDHQ AIENEGGNGT VLKLNISKNG AVGSGNPSTD  120
HEVNTSSVKW MSSKMRMMRK MSNPDHTSSS SKSSGDKPIS MKLSSHKFEE QKSQHPSSQL  180
GAEMISCSNN SSNNMNSIPI IRVCSDCSTT KTPLWRSGPR GPKVLDYHFV TLVESGKGRR  240
GGQWQQREGA AXXXXXXXXX XXXXPAPAAA SDTTLTVAAP SMKSSKVQHK DNKSRVSSTV  300
PFKKRPYSKL TSSPSSRGKS KKLCFEAPTA AAATTALQRV FPQDEREAAI LLMALSCGLV  360
HG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041453.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361595.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A498KEN10.0A0A498KEN1_MALDO; Uncharacterized protein
STRINGXP_009361595.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.19e-10GATA family protein