PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041485.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 346aa    MW: 37528.1 Da    PI: 8.04
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041485.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++ 
      Pbr041485.1  5 KQKWTVEEEEALRAGVRKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                     79***********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.739161IPR017930Myb domain
SuperFamilySSF466891.29E-16264IPR009057Homeodomain-like
SMARTSM007177.7E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-15556IPR009057Homeodomain-like
PfamPF002492.9E-9556IPR001005SANT/Myb domain
CDDcd116602.46E-24657No hitNo description
SMARTSM005267.3E-11177242IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150416.93179247IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.9E-9181243IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.61E-10181251IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.6E-6183239IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGNPKQKWTV EEEEALRAGV RKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSS  60
TGPREKSRPK ARTNPDVAVA SVSVPQTSSA APVRRDSPAA AAAAAATPAR RDSPAAAPVR  120
RDSPAAAPVG RDSPAEAPVR RDAPAATPFK REASTETPVR RDTTPVADDS STGLSDAIPA  180
PVCNAMIFEA LSASTDPNGL DATAIASFIE QRKEVPQNFR KSLTGRLRRL VQQDKLEKIQ  240
HCYKVKTDPL SVMKAPAPMQ NDIQPKQSQS PVYVTVGSDT LEESARAAAQ SIAEAEYKSY  300
LAAEQMKEAE RISFMVEDTE SMLQFANEIL EQCNIQNSDL FTPIA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041485.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285385e-48FR828538.1 Rosa rugosa mRNA for putative MYB transcription factor (myb5 gene).
GenBankFR8285475e-48FR828547.1 Rosa rugosa mRNA for putative MYB transcription factor (myb14 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361643.10.0PREDICTED: single myb histone 4-like isoform X1
RefseqXP_009361644.10.0PREDICTED: single myb histone 4-like isoform X1
SwissprotQ8W1191e-28SMH4_MAIZE; Single myb histone 4
TrEMBLA0A498KL950.0A0A498KL95_MALDO; Uncharacterized protein
STRINGXP_009361643.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-25telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]