PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr041520.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 274aa MW: 30925.2 Da PI: 6.3743

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr041520.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde l d+vk +G g+W+ +a++ g++R++k+c++rw++yl Pbr041520.1 14 RGAWCAEEDEVLTDYVKTHGEGQWRHVAKKAGLNRSGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	49.9	7.5e-16	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+ Pbr041520.1 67 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWN 109 7899****************.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.409	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.56E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.38E-10	16	61	No hit	No description
PROSITE profile	PS51294	19.975	66	116	IPR017930	Myb domain
SMART	SM00717	7.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-14	67	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-23	69	116	IPR009057	Homeodomain-like
CDD	cd00167	4.08E-11	71	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGRKPAGDTD GLKRGAWCAE EDEVLTDYVK THGEGQWRHV AKKAGLNRSG KSCRLRWLNY 60 LKPGVKRGNI SPEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNI SLSKRIQEER 120 PRRIINNKQA PNAGDNHHQR GNYCSNPSKD EDDQSNPVKS NPVALSDISD DRDQNSSLSF 180 LRDFDSYIHG LSHEAEMING FGNYVVDDSN FVGHGDGTKC EDLVLREDVE AAMWKNLGAT 240 SDHLLFQPNH EDVDLHAISA FLNSQDGYHQ WIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-25	12	116	5	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr041520.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009361730.1	0.0	PREDICTED: transcription factor WER-like
TrEMBL	A0A498KFH0	0.0	A0A498KFH0_MALDO; Uncharacterized protein
STRING	XP_009361730.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17855	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	3e-54	myb domain protein 66