PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr041704.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 340aa MW: 36238.9 Da PI: 4.891

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr041704.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.6	1.6e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r Pbr041704.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.8E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	5.28E-21	4	94	IPR009072	Histone-fold
Pfam	PF00808	2.8E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNAVHLKHC VQSYNVFDFL RDIVSRVPDY THGHSDAAAD DRTLSKRRKP PGDEGIDSDE 120 ELKRSKMLEI KNSSSSGRGR GRGRGRGRGR GRTTERDTSH HETESDPCTS LRQITEPNPN 180 PGMVVDDVSE SKDILKENVI APDESDPAVR NFDLNADVND TDDTKAAATA AQASATAAQA 240 SATAAQASAT AAQASATAAQ ASSTAARAAP TAAPAAPTAS QAAPTAAQAS SAGPISEPKH 300 EEYPGWSLSD VDGMAIDPIQ LANLSRRLDE DEEDYDEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	150	RGRGRGRGRG
2	141	151	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr041704.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009361920.1	0.0	PREDICTED: dr1-associated corepressor homolog
TrEMBL	A0A498JEA7	1e-172	A0A498JEA7_MALDO; Uncharacterized protein
STRING	XP_009361920.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-71	nuclear factor Y, subunit C11