PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr041707.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 343aa MW: 36932 Da PI: 9.3587

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr041707.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Pbr041707.1 150 FTCNFCKRDFSTSQALGGHQNAH 172 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.24E-6	147	177	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.8E-4	148	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.448	150	177	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.6E-4	150	174	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAEEHQSPSE ASNISGATDG TPPPKKDSPP PPPPPDLPDQ KMKMKMKEKI IIDDSDDEQP 60 QPQPKLKKPS AAAGSSSSLT PSSRALLHLK LSNNDPGHAL GSSKELVLFN PLNQDSSLNP 120 EGLELLSQHN EPRNESPRGG DGRKPRTRAF TCNFCKRDFS TSQALGGHQN AHKQERALAK 180 RRQGGIGMDN LFGHSYRYHS PYLSITQHPL SGSYGRSLGV RMDSMIHKPS YPWSASTFGF 240 GRFGHGIGAG SWSSSRPGGL MNNFQSSIDR LNLHGLHANT TQTLGLSGTS SASRFDQEIG 300 SSRNFGGSNF GINRPIIAGD VLRHEPLEPD TDASGLDLSL KL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAEEHQSPSE ASNISGATDG TPPPKKDSPP PPPPPDLPDQ KMKMKMKEKI IIDDSDDEQP  60
QPQPKLKKPS AAAGSSSSLT PSSRALLHLK LSNNDPGHAL GSSKELVLFN PLNQDSSLNP  120
EGLELLSQHN EPRNESPRGG DGRKPRTRAF TCNFCKRDFS TSQALGGHQN AHKQERALAK  180
RRQGGIGMDN LFGHSYRYHS PYLSITQHPL SGSYGRSLGV RMDSMIHKPS YPWSASTFGF  240
GRFGHGIGAG SWSSSRPGGL MNNFQSSIDR LNLHGLHANT TQTLGLSGTS SASRFDQEIG  300
SSRNFGGSNF GINRPIIAGD VLRHEPLEPD TDASGLDLSL KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr041707.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009362002.1	0.0	PREDICTED: uncharacterized protein LOC103952182
TrEMBL	A0A498JIM9	0.0	A0A498JIM9_MALDO; Uncharacterized protein
STRING	XP_009362002.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	4e-17	C2H2 family protein