PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042005.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 356aa    MW: 40462.2 Da    PI: 8.3933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042005.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.2e-072041223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg +F+ + +Lk+H+++H
  Pbr042005.1 20 TCEECGATFKKPAHLKQHMQSH 41
                 7*******************99 PP
2zf-C2H218.74.7e-0677101123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y C+  dC  sF+rk++L+rH+  H
  Pbr042005.1  77 YICSvdDCRSSFRRKDHLNRHLLQH 101
                  89*******************9887 PP
3zf-C2H2130.00032145169123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++C+   Cgk+F   s L++H ++H
  Pbr042005.1 145 HVCQeiGCGKVFLFASKLRKHESSH 169
                  79********************997 PP
4zf-C2H215.16.8e-05237261223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+   C  +Fs+ksnL++H +  H
  Pbr042005.1 237 KCSykGCLHTFSTKSNLTQHVKAvH 261
                  688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-51642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.9E-81841No hitNo description
SMARTSM003550.00171941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.781946IPR007087Zinc finger, C2H2
PfamPF138940.00122041No hitNo description
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-872101No hitNo description
Gene3DG3DSA:3.30.160.605.0E-974103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.47177106IPR007087Zinc finger, C2H2
SMARTSM003550.001777101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-4104128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.44E-5104132No hitNo description
PROSITE profilePS5015710.679106136IPR007087Zinc finger, C2H2
SMARTSM003550.013106131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-7141169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.99E-5141171No hitNo description
SMARTSM003550.13145169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827145174IPR007087Zinc finger, C2H2
PROSITE patternPS000280147171IPR007087Zinc finger, C2H2
SMARTSM003559.6177202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
SMARTSM0035545205226IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-5217258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.8E-8218273No hitNo description
SMARTSM003550.0028236261IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.071236266IPR007087Zinc finger, C2H2
PROSITE patternPS000280238261IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5260290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.8267293IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280269293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDMAKEAGGE GEGEKEKCNT CEECGATFKK PAHLKQHMQS HSLEELQNAR AFDLNGPVTG  60
GRPPVKLHQA SLNHRPYICS VDDCRSSFRR KDHLNRHLLQ HQGKLFKCPI ENCNRGFVCQ  120
GNMSRHVKEL HSEDGTYVGR GQKQHVCQEI GCGKVFLFAS KLRKHESSHV HMDSVEAFCS  180
EAGCMKYFTN DQCLKDHILS CHQHVMCEIC GSKKLNRNIK RHLLTHKGGV PSVERIKCSY  240
KGCLHTFSTK SNLTQHVKAV HLEDKPFACS FSGCGMRFAY KHVRDNHEKT RCHVYAYGDF  300
VEADEQFQSR PRGGLKRKCP TIEMLLRKRV TPPDQLALEP EYLSWLLLQD AEDEN*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042005.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347171.10.0PREDICTED: transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A498HYA10.0A0A498HYA1_MALDO; Uncharacterized protein
STRINGXP_009347171.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-117transcription factor IIIA