PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042102.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 210aa    MW: 23075.3 Da    PI: 8.8823
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042102.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.93e-32114170158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k   k+rkpylheSRh+hAlrR+Rg+gGrF
  Pbr042102.1 114 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKNRKPYLHESRHQHALRRARGCGGRF 170
                  69***************************9.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.9E-36112173IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.071113173IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27115170IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.1E-24116138IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860118138IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.1E-24147170IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTSSVRHHSD NSDSDDQQSH SESQVHSSLP AIGMSHPGVA TTNMQYAVPP QVGTGHAVAP  60
GAYPYPDPYY RSIFAPYETQ PYPSQPYGAA QPTVHLQLMG IQQAGVPLPS DAVEEPVFVN  120
AKQYHGILRR RQSRAKAESE NKALKNRKPY LHESRHQHAL RRARGCGGRF LNAKKNENEQ  180
DEMTSGNKSQ SNINLNSDKN ELASSDRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21113178166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362237.11e-155PREDICTED: nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP14e-70NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A498JVB21e-150A0A498JVB2_MALDO; Uncharacterized protein
STRINGXP_009362237.11e-154(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-56nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]