PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042103.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 853aa    MW: 92965.7 Da    PI: 6.3134
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042103.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182482357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pbr042103.1 24 KYVRYTPEQVEALERVYSECPKPSSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                 6789*****************************************************97 PP
2START169.62.1e-531733792203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+++d++ W ++++  e+l  i  g  g+++l +++
  Pbr042103.1 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEIFKDRKSWFRDCRCLEVLSLIPAGngGTIELVYMQ 269
                  68999*****************************************************.8888888888****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl++s+ + 
  Pbr042103.1 270 TYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgptSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLYESSKIL 367
                  ***************************************999999***************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++kt+ ++l++ 
  Pbr042103.1 368 AQKTTISALRHI 379
                  *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-19882IPR009057Homeodomain-like
PROSITE profilePS5007115.6451983IPR001356Homeobox domain
SMARTSM003896.6E-152187IPR001356Homeobox domain
PfamPF000464.4E-162482IPR001356Homeobox domain
CDDcd000865.12E-162484No hitNo description
SuperFamilySSF466891.71E-162485IPR009057Homeodomain-like
CDDcd146864.95E-676115No hitNo description
PROSITE profilePS5084826.76163364IPR002913START domain
CDDcd088753.31E-70167383No hitNo description
Gene3DG3DSA:3.30.530.201.5E-22171377IPR023393START-like domain
SMARTSM002341.1E-48172382IPR002913START domain
SuperFamilySSF559611.19E-36173384No hitNo description
PfamPF018525.8E-51173380IPR002913START domain
PfamPF086704.1E-49707851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MALLMHRDSP GSSSGGRQQM DSSKYVRYTP EQVEALERVY SECPKPSSLK RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLSAMN KLLMEENDRL QKQVSHLVYE  120
NGFMKQQLHT ASGTTTDNSC ESVVMSGQHQ QQQNPTPQHP KRDANNPAGL LAIAEETLAE  180
FLSKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEIFKDRK  240
SWFRDCRCLE VLSLIPAGNG GTIELVYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVVCE  300
RSLTSSTGGP TGPTSASFVR AEMLPSGYLI RPCEGGGSII NIVDHVDLDA WSVPEVLRSL  360
YESSKILAQK TTISALRHIR QIAQESSGEI QHGGGRQPAV LRTFCQRLCS GFNDAVNGFA  420
DDGWTLMGSD GVEDVTIAIN SSPNKVLGSQ YNTSIFSPFG GGVLCAKASM LLQSVPPALL  480
VRFLREHRSE WADYGVDAYS AACLKASPYA VPLARGGGFP TTQNILPLAQ TVEHEEFLEV  540
VRLEGPAFSP EDVALAQDMY LLELCSGVDE NAVGACAQLV FAPIDESFAD DAPLLPSGFH  600
VIPLDPKADG PTASRTLDLA STLEIGTSGA RAVNDPDGNG YNLRSVLTIA FQFTFENHLR  660
DNVAAMARQY VRSVVSSVQR VAMAIAPSRL SSQIGPKPLP GSPEAHTLAR WIFRSYRIHT  720
GGELFRVDIS SGDAVLKQLW RHSDAIMCCS VKTNASPVFT FANQAGLDML ETTLVALQDI  780
TLDKILDEAG RKLLCSEFSK ITQQGFAYLP AGICASSMGR PVSYEQAVAW KVVNDDDSNH  840
CLALMFMNWS FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042103.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774240.0FJ177424.1 Malus x domestica putative PHV HD-ZIPIII mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362238.10.0PREDICTED: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A498JSU20.0A0A498JSU2_MALDO; Uncharacterized protein
STRINGXP_009362238.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]