PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr042132.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 160aa MW: 18484.7 Da PI: 5.0564

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr042132.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	3	50	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+++G g W+ ++r+ g++R++k+c+ rw++yl Pbr042132.1 3 KGAWTQQEDDILRQCVEKHGDGKWHQVPRETGLNRCRKSCRQRWLNYL 50 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.965	1	54	IPR017930	Myb domain
SMART	SM00717	1.4E-15	2	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-22	2	53	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-16	3	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.68E-21	4	78	IPR009057	Homeodomain-like
CDD	cd00167	1.87E-11	5	50	No hit	No description
PROSITE profile	PS50090	3.892	51	92	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-4	54	77	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MRKGAWTQQE DDILRQCVEK HGDGKWHQVP RETGLNRCRK SCRQRWLNYL KPNLKSGDFT 60 EDEIDLIHRL QKLLGNRQVP LFESAIDSWK TMLHDTDNVD GTPFSSLGLG EDLFTNFWVE 120 DIAQSTMVGM NSADEGLHMS GNFSFRENLW NLEEEITKI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr042132.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT601122	1e-127	KT601122.1 Pyrus x bretschneideri cultivar Red Zaosu MYB10b transcription factor mRNA, complete cds.
GenBank	KT748756	1e-127	KT748756.1 Pyrus pyrifolia MYBa mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018504231.1	6e-51	PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB114-like
TrEMBL	A0A498JZK5	5e-50	A0A498JZK5_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	6e-36	myb domain protein 113

Publications ? help Back to Top
Zhai R, et al. Two MYB transcription factors regulate flavonoid biosynthesis in pear fruit (Pyrus bretschneideri Rehd.). J. Exp. Bot., 2016. 67(5): p. 1275-84 [PMID:26687179]