PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr042186.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 389aa MW: 41188.6 Da PI: 8.7377

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr042186.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.4e-37	103	160	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg rknk Pbr042186.1 103 TENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGYRKNKC 160 57899***************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.0E-31	105	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.966	106	160	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	106	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MIQELFGGAG LSNIEGGERK SFTFHGGTTC SPSLSPSPSP SSSTTTTATA TTTITAGFLR 60 TKSFTFHGGT TCSPSLSPSP SPSSSTTTTA TATTTITAGL SSTENLRCPR CDSSNTKFCY 120 YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGYRKNKC VTGSTASIGK TAAGKLKTVV 180 SEIGRSGFGG GFDQEVQASP ILWGSPQNSH LLALLKASHH QNPNPNQLCN SVNVKEEGGM 240 NMIRSHMMTT EAIAMNTART LGLDPVCQAP SLGLCSSFWR NNNQNQPPPS HHQHQQNGFI 300 VGHEVQSSNI GIQELFQRLT PSTSQSGSYY SDQLNNVVAS SSSSSLSSYS TSSILDSSPA 360 VGGGEMGYWN PAFTSWSFDL PTTNGAYH*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MIQELFGGAG LSNIEGGERK SFTFHGGTTC SPSLSPSPSP SSSTTTTATA TTTITAGFLR  60
TKSFTFHGGT TCSPSLSPSP SPSSSTTTTA TATTTITAGL SSTENLRCPR CDSSNTKFCY  120
YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGYRKNKC VTGSTASIGK TAAGKLKTVV  180
SEIGRSGFGG GFDQEVQASP ILWGSPQNSH LLALLKASHH QNPNPNQLCN SVNVKEEGGM  240
NMIRSHMMTT EAIAMNTART LGLDPVCQAP SLGLCSSFWR NNNQNQPPPS HHQHQQNGFI  300
VGHEVQSSNI GIQELFQRLT PSTSQSGSYY SDQLNNVVAS SSSSSLSSYS TSSILDSSPA  360
VGGGEMGYWN PAFTSWSFDL PTTNGAYH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr042186.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-39	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347242.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	D9ZIY2	0.0	D9ZIY2_MALDO; DOF domain class transcription factor
STRING	XP_009347242.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-33	DOF zinc finger protein 1