PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042299.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 376aa    MW: 41530.5 Da    PI: 8.1149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042299.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05134156123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg+ F+ +++L +H+  H
  Pbr042299.1 134 FPCTACGEIFPKPETLDQHQAIH 156
                  89******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.429134161IPR007087Zinc finger, C2H2
PROSITE patternPS000280136157IPR007087Zinc finger, C2H2
SuperFamilySSF563992.4E-15159374No hitNo description
Gene3DG3DSA:3.90.228.102.2E-12161374IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MANISTLFNK FLSLLILLLH LGCFSSTATA NIPKRPHHRR KLSTHLSKPS TLKPQKALST  60
SWSYLKRIFT SKSYKITCTN IIQSQLSTPP RSSHHSIVSL VLPDSDPKYL PGSLPESDIS  120
ADSHQCFPLR NDIFPCTACG EIFPKPETLD QHQAIHHAVS ELHDGDSGKN IVRIIFKTGW  180
TDTRKAPEIH RILKIHNSGK ILARFEEYRE LVKSKAARNG TVRRRDERCI ADGNELLRFH  240
CSTFVCDLGL NGNSGICNHE HCSVCGIIKS GFSPKLDGIS TLSSSSRAHV AIPEDIEEEF  300
QFMNVKRAML VCRVVAGRVG CDTVEDIDDV DKEGGGFDSV VGGGGSGVHT RVDEEELLVF  360
NPRAVLPCFV IIYTM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042299.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506922.10.0PREDICTED: uncharacterized protein LOC103963270
TrEMBLA0A498K9V90.0A0A498K9V9_MALDO; Uncharacterized protein
STRINGXP_008366236.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-109C2H2 family protein