PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042396.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 657aa    MW: 72246.5 Da    PI: 7.5253
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042396.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-22123224199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +   +  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + +++ 
  Pbr042396.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--NILAKDVHGEIWDFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFF--RAENGD 216
                  89****************************987555556..69999********************************************..348888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+v+r+
  Pbr042396.1 217 LCVGVRRA 224
                  9****996 PP
2Auxin_resp112.54e-37278361183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++Fev Y+Prast+eF+vk++ v++a++v+++ GmRfkm fetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
  Pbr042396.1 278 AATLAASGQPFEVAYYPRASTPEFCVKASAVRAAMQVRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPICWPESPWRLLQ 361
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-36118227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-28118226IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-21122223No hitNo description
PfamPF023623.9E-20123224IPR003340B3 DNA binding domain
SMARTSM010191.8E-20123225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788123225IPR003340B3 DNA binding domain
PfamPF065073.8E-32278361IPR010525Auxin response factor
PROSITE profilePS5174511.194593656IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MITVMDSVRE PLRSNSEKWL DSQFWHACAG GMVQLPPINT KVFYFPQGHA EYAHGRVDFG  60
NSRIPPLILS KISAIRYMAD PETDEVFAKM RLIPVRDGGF DLEDDGFVGN NGTVENPEKP  120
TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QNILAKDVHG EIWDFRHIYR  180
GTPRRHLLTT GWSNFVNHKK LVAGDSIVFF RAENGDLCVG VRRAKRGIGS GPEYASGNSG  240
SQYGVYSGLS RKNGNKVMEK TCSGDANGKI RAEYVIEAAT LAASGQPFEV AYYPRASTPE  300
FCVKASAVRA AMQVRWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI CWPESPWRLL  360
QVSWDEPDLL QNVKRVSPWL VELVSSIPAI HLSPFSSPRK KLRLQHIPDY SLVGQLPMPS  420
VCSNSLNSSN LLCNVSDNLS AIIQGARHAQ FGLSSSELFF NKLQSSLFPI GFQQHGHFAP  480
LETIGGSFMR KAESNDNISC CLKKGIPTQN LKDNDEIKTP HIVLFGQVIF TGEQISKSSS  540
GDDSSSDGHS KKTTNCSDGS GSTSIGHGSV ENCSDGGSPR KTEYHKSDLS LETGYCKVFI  600
DSGEVGTLDL SVLRSYQELY GKLASMFGKE SSKKLRNVLY RDASGVVKHT GDEPFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-792038251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042396.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344765.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498KRQ90.0A0A498KRQ9_MALDO; Auxin response factor
STRINGXP_009344765.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]