PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042464.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 245aa    MW: 27149.2 Da    PI: 10.7345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042464.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.3e-09102161192257
         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                  + ++++ gEa+aVn+ +   ++ +++++l++    vL++vk+lsPk+vv  ++ + +++ +F +r 
  Pbr042464.1 102 DVIQTNDGEAVAVNFPI--WSTSNQPAALPN----VLRFVKQLSPKIVVSLDRGCGRSDLPFPQRT 161
                  4578889********99..666678999999....***************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561762.86E-6131IPR016166FAD-binding, type 2
PfamPF035144.6E-7102161IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016614Molecular Functionoxidoreductase activity, acting on CH-OH group of donors
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGEDLFWAIR GGGGGSFGVI LWWKIKLVPV PETVTVFTVP KTLETGATKV LHKWQQVAAT  60
KLDEDLFMRV VIQVSEGSKT GNRTVTTLYQ AQFLGGADRL LDVIQTNDGE AVAVNFPIWS  120
TSNQPAALPN VLRFVKQLSP KIVVSLDRGC GRSDLPFPQR TLQPFLPRIL LQQSPTSDRS  180
PNGGRSRAMS PAVVSGCLAE RTHGTYPSRT HVPCRTLSLR HGKDIQRTWT PHKRHFWCEQ  240
RQTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ud8_A5e-301194225425FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
4ud8_B5e-301194225425FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042464.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347389.10.0PREDICTED: uncharacterized protein LOC103939060
TrEMBLM5WPC02e-54M5WPC0_PRUPE; Uncharacterized protein
STRINGXP_009347389.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.12e-12GRAS family protein