PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042549.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 381aa    MW: 42171.5 Da    PI: 4.9363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042549.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-19258308255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd s    +  r++lg+f taeeAa+a+++a+ +++g
  Pbr042549.1 258 RYRGVRRRP-WGKYAAEIRDSSR---HgVRVWLGTFNTAEEAARAYDRAAYAMRG 308
                  69*******.**********432...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484523.04E-6358IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.109.8E-7463IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5120316.112105194IPR007052CS domain
SuperFamilySSF497641.03E-30105203IPR008978HSP20-like chaperone
Gene3DG3DSA:2.60.40.7907.3E-27106194IPR008978HSP20-like chaperone
PfamPF049691.4E-16109184IPR007052CS domain
CDDcd064668.48E-28111194No hitNo description
SMARTSM003802.6E-35258322IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22258317IPR016177DNA-binding domain
PROSITE profilePS5103223.683258316IPR001471AP2/ERF domain
PfamPF008475.7E-14258308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-30258317IPR001471AP2/ERF domain
CDDcd000188.06E-20258317No hitNo description
PRINTSPR003674.7E-11259270IPR001471AP2/ERF domain
PRINTSPR003674.7E-11282298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MASDLEKRAN DAFIDDRFEL ADDLYTQAIA LSPPSAKLYS DSAPANIKCG NIPDLIKEFD  60
QKIAEETAIL PTPLLEKNIT ENVIPAKDVQ PASQPSIQVT VASIEPKYRH EFSQKPEEVV  120
VTIFAKGIPA KDVNVDLGEQ KLGVSIDVAG EDTYYFQTRL FGKIIPEKCR FDVLSTKVEI  180
RLAKAEPLHW TSLDFSEDNP VPLKVTGPVV GVPSPSYLSS KPRTNPVTVH PMPSNDANCT  240
YMDSQVKDME EKEAGEVRYR GVRRRPWGKY AAEIRDSSRH GVRVWLGTFN TAEEAARAYD  300
RAAYAMRGSL AILNFPNEAP WAGGVSSSSS ASANFSSSSS SMPMQGRTRG WQDEVLELEC  360
LDDKLLEELL DFDHQKKNKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jki_S3e-37107194188SGT1-LIKE PROTEIN
2jki_T3e-37107194188SGT1-LIKE PROTEIN
2jki_U3e-37107194188SGT1-LIKE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in basal disease resistance to bacterial blight (X.oryzae). May act as positive regulator of basal defense. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. {ECO:0000269|PubMed:18257679}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042549.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hydrogen peroxide. {ECO:0000269|PubMed:14733924}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1831010.0GU183101.1 Malus hupehensis sgt1-b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347425.10.0PREDICTED: TMV resistance protein N-like
RefseqXP_009347433.10.0PREDICTED: TMV resistance protein N-like
SwissprotQ0JL443e-50SGT1_ORYSJ; Protein SGT1 homolog
TrEMBLA0A498J3I51e-121A0A498J3I5_MALDO; Uncharacterized protein
STRINGXP_009347425.10.0(Pyrus x bretschneideri)
STRINGXP_009347433.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-23ERF family protein
Publications ? help Back to Top
  1. Shirasu K, et al.
    A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans.
    Cell, 1999. 99(4): p. 355-66
    [PMID:10571178]
  2. Yamamoto T, et al.
    Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex.
    Biochem. Biophys. Res. Commun., 2004. 314(2): p. 434-9
    [PMID:14733924]
  3. Wang Y, et al.
    OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance.
    Mol. Plant Microbe Interact., 2008. 21(3): p. 294-303
    [PMID:18257679]