PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042596.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 197aa    MW: 21446.2 Da    PI: 9.4555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042596.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00174870123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H  +H
  Pbr042596.1 48 FECKTCNRQFPSFQALGGHRASH 70
                 89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-84670No hitNo description
PfamPF139123.4E-134772IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274875IPR007087Zinc finger, C2H2
SMARTSM003550.164870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-897124No hitNo description
PfamPF139121.5E-9101126IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891102124IPR007087Zinc finger, C2H2
SMARTSM003550.61102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNMKRSIADV RELDHGLTLA NCLMLLSRGI NNNDNQYDSF SVSPSRVFEC KTCNRQFPSF  60
QALGGHRASH KKPRLTGPSG DGNSNSSDQS LSQGSSPKPR THECNICGLE FAIGQALGGH  120
MRRHRAALSS SNTTSNIHDR YSSSMSLNPQ PAQVFQVLKK TNSGRRAMCL DLNLTPLEND  180
LEILQLGKAA PLVGFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042596.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347446.11e-144PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A498JLD21e-134A0A498JLD2_MALDO; Uncharacterized protein
STRINGXP_009347446.11e-143(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-38C2H2 family protein