PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042646.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 228aa    MW: 24067 Da    PI: 8.9213
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042646.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.2e-083156227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 kt+lC+ +     Ck+Gd+C+FaHg+
  Pbr042646.1 31 KTRLCNKYNTVEGCKFGDKCHFAHGE 56
                 8*********99************96 PP
2zf-CCCH34.82.8e-11194219127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++t+lC +f + GtC +GdrC+FaHg+
  Pbr042646.1 194 FRTKLCENFTK-GTCTFGDRCHFAHGQ 219
                  589********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-142760IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-82860IPR000571Zinc finger, CCCH-type
SMARTSM003560.00232956IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5352957IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-63156IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-1491171IPR004088K Homology domain, type 1
SMARTSM003228.3E-1099169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.5E-1499169IPR004088K Homology domain, type 1
PROSITE profilePS5008413.565100164IPR004088K Homology domain, type 1
CDDcd001052.12E-13102164No hitNo description
PfamPF000131.9E-10102166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.5E-16191224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-9192223IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7193219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.99193220IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9194219IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTGSNPTHPP PPRNSAAPPS FPDGSSPPAV KTRLCNKYNT VEGCKFGDKC HFAHGEWELG  60
RPTAQSYEDP RAGAGFPGRM GGRMESAPPA HGAVASFGAT ATAKISVDAS LAGAIIGKNG  120
VHSKQICRVT GAKLSIREHE TDHKLRNIEL EGTLDQIKDA SAMVRELIGN VSSGAGPHNM  180
RNPAMSASSP ASNFRTKLCE NFTKGTCTFG DRCHFAHGQE ELRRSAM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375050.11e-167PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498K8X91e-166A0A498K8X9_MALDO; Uncharacterized protein
STRINGXP_009375050.11e-166(Pyrus x bretschneideri)
STRINGXP_008344684.11e-166(Malus domestica)
STRINGXP_008363342.11e-166(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-61C3H family protein