PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042773.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family DBB
Protein Properties Length: 186aa    MW: 20532.5 Da    PI: 7.4075
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042773.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++ fC  ++  lC+ C ++ H
  Pbr042773.1  4 LCDSCESAAAIVFCAADEAALCRACDEKVH 33
                 7**************************998 PP
2zf-B_box26.41.4e-085291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 e ++C+ +e+ ++ ++Ce +++ lC +C l  H g    H
  Pbr042773.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDLIVHVGgkrmH 91
                 789**************************99895544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.381147IPR000315B-box-type zinc finger
CDDcd000212.08E-6345No hitNo description
PfamPF006438.6E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595184IPR000315B-box-type zinc finger
SMARTSM003362.2E-105196IPR000315B-box-type zinc finger
PfamPF006432.9E-65285IPR000315B-box-type zinc finger
CDDcd000211.26E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDSCES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLATP SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD LIVHVGGKRM HGRYLVLRQR VEFPGDKPGN IEDPASQPTD  120
PGETRRIQQP HPPRMTIGEN LQNRRVSPIR ASDANADAHV KMDKKLIDLN MKPHRMHGQA  180
SNKED*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378203.11e-136PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM52e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A498HY221e-125A0A498HY22_MALDO; Uncharacterized protein
TrEMBLD9ZIX11e-129D9ZIX1_MALDO; COL domain class transcription factor
STRINGXP_009378203.11e-135(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-77DBB family protein