PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00000g00252.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 416aa MW: 45483.2 Da PI: 6.5949

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00000g00252.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.6	4.5e-34	23	146	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssss 69 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + Peaxi162Scf00000g00252.1 23 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELppwkptigpientnfdqeK--- 104 89*************************************************************9888877655443222220... PP TCP 70 aseceaesssssasnsssg..........................k 89 ++++++ s++++ + + Peaxi162Scf00000g00252.1 105 ----KQQEENFSTQQNDVNvslvdsiagpsskremimlgnesahsS 146 ....222222333323233455555555433333333322222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-30	23	181	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.295	24	82	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MGLKNSGGEI VEVQGGHIVR SIGRKDRHSK VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKAAID ELEELPPWKP TIGPIENTNF DQEKKQQEEN FSTQQNDVNV 120 SLVDSIAGPS SKREMIMLGN ESAHSSGNNA NARFMPQSLD SDTIADTIKS FFPMGGSSEG 180 SSSAAMQFHN FQESNLLSRS NSQSQDLRLS LQSLQDPILL HHQNQQAQHH NHSADHTEEQ 240 VQTHFQASNF FHGTPLGFDA SGWSEHQQQP VELGRMQRLA ATRAGGDTGI ALGGGAVTGG 300 GGYLFNSQPA PPLIQQFFTQ NQFFSQRGPL QSSYSPSIRA WIDPSAIAIA TADPIYHHQH 360 HQAVLPMYSA SIPGIGFASE LGGFSGFRIP ARIQGDIEEH DGISDKPSSA SSDSRH

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MGLKNSGGEI VEVQGGHIVR SIGRKDRHSK VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKAAID ELEELPPWKP TIGPIENTNF DQEKKQQEEN FSTQQNDVNV  120
SLVDSIAGPS SKREMIMLGN ESAHSSGNNA NARFMPQSLD SDTIADTIKS FFPMGGSSEG  180
SSSAAMQFHN FQESNLLSRS NSQSQDLRLS LQSLQDPILL HHQNQQAQHH NHSADHTEEQ  240
VQTHFQASNF FHGTPLGFDA SGWSEHQQQP VELGRMQRLA ATRAGGDTGI ALGGGAVTGG  300
GGYLFNSQPA PPLIQQFFTQ NQFFSQRGPL QSSYSPSIRA WIDPSAIAIA TADPIYHHQH  360
HQAVLPMYSA SIPGIGFASE LGGFSGFRIP ARIQGDIEEH DGISDKPSSA SSDSRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-20	29	82	1	54	Putative transcription factor PCF6
5zkt_B	2e-20	29	82	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209584	1e-107	AC209584.1 Solanum lycopersicum DNA sequence from clone LE_HBa-21L2 on chromosome 12, complete sequence.
GenBank	EF091574	1e-107	EF091574.1 Solanum lycopersicum SlTCP3 mRNA, complete cds.
GenBank	GQ496321	1e-107	GQ496321.1 Solanum lycopersicum TCP transcription factor 3 (TCP3) mRNA, complete cds.
GenBank	HG975451	1e-107	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	1e-107	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630327.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_009785152.1	0.0	PREDICTED: transcription factor TCP4
Refseq	XP_016463776.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_016463777.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_016472433.1	0.0	PREDICTED: transcription factor TCP4-like
Swissprot	Q8LPR5	1e-102	TCP4_ARATH; Transcription factor TCP4
TrEMBL	A0A4D6FBE8	0.0	A0A4D6FBE8_PETHY; TCP10
STRING	XP_009785152.1	0.0	(Nicotiana sylvestris)
STRING	XP_009630327.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3207	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	9e-76	TCP family protein

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]