PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00001g00042.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 190aa MW: 21864.1 Da PI: 4.5236

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00001g00042.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.1	3e-35	8	122	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ e ++wyf+s+r + +r+t +gyWk Peaxi162Scf00001g00042.1 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLD-----EGNKWYFYSRRTQ--------SRITGNGYWKP 78 79***********************999.99**********8.....6799*9854........799**** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g ++++s+ ++ +vg+kk +fy g+ p+g++t+Wvm+ey+l Peaxi162Scf00001g00042.1 79 LGVGEPIYSSsSSDKVGMKKYYAFYIGEPPEGVETNWVMQEYSL 122 ****9867788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-45	5	157	IPR003441	NAC domain
PROSITE profile	PS51005	45.253	8	158	IPR003441	NAC domain
Pfam	PF02365	9.7E-22	9	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDEGNKWY 60 FYSRRTQSRI TGNGYWKPLG VGEPIYSSSS SDKVGMKKYY AFYIGEPPEG VETNWVMQEY 120 SLSDSSSSSG TSRSSSRRRS SRSKIDYSKW VICRVYERNC DNDNDDGTEL SCLDEVFLSL 180 DDLDEISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-36	4	159	16	169	NAC domain-containing protein 19
3swm_B	1e-36	4	159	16	169	NAC domain-containing protein 19
3swm_C	1e-36	4	159	16	169	NAC domain-containing protein 19
3swm_D	1e-36	4	159	16	169	NAC domain-containing protein 19
3swp_A	1e-36	4	159	16	169	NAC domain-containing protein 19
3swp_B	1e-36	4	159	16	169	NAC domain-containing protein 19
3swp_C	1e-36	4	159	16	169	NAC domain-containing protein 19
3swp_D	1e-36	4	159	16	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-44	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622295.1	1e-111	PREDICTED: NAC domain-containing protein 104 isoform X1
Refseq	XP_016435084.1	1e-111	PREDICTED: NAC domain-containing protein 104-like isoform X1
Swissprot	Q8GWK6	7e-85	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1S3X589	1e-110	A0A1S3X589_TOBAC; NAC domain-containing protein 104-like isoform X1
STRING	XP_009622295.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	5e-71	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]