PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00003g00077.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SRS

Protein Properties

Length: 198aa MW: 22316.9 Da PI: 8.7507

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00003g00077.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	174.5	5e-54	10	149	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88 t++CqdCGnqakkdC + RCRtCCksrg +C+th kstW+p+++rr r+ +++++ ++ +++++++ +++++ + Peaxi162Scf00003g00077.1 10 STSRCQDCGNQAKKDCPYLRCRTCCKSRGNQCQTHEKSTWIPVSRRRPRHLLHQQQQLSTIQQQNQQQLQNPKRY--------RE 86 5789******************************************965555544444333333333333332........22 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ s +++lP+evs +avfrcvrvssvd+ +++aYqt+v+igGhvfkGiLyd G++e Peaxi162Scf00003g00077.1 87 N---ENPSAVLGGQEDLPAEVSLPAVFRCVRVSSVDNVVDQYAYQTSVNIGGHVFKGILYDLGPAE 149 2...222223345677*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-57	11	148	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.3E-24	14	55	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-24	100	147	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MMREEGSSLS TSRCQDCGNQ AKKDCPYLRC RTCCKSRGNQ CQTHEKSTWI PVSRRRPRHL 60 LHQQQQLSTI QQQNQQQLQN PKRYRENENP SAVLGGQEDL PAEVSLPAVF RCVRVSSVDN 120 VVDQYAYQTS VNIGGHVFKG ILYDLGPAES HHNNMAKEST SSGGFHQQLT TNLTPPSYPS 180 SFNPFMPGTQ FFQLPKSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255330.1	1e-94	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	3e-52	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A1J6I112	3e-93	A0A1J6I112_NICAT; Protein shi related sequence 1
STRING	XP_009607768.1	4e-90	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-51	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]