PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00003g00107.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 314aa MW: 34264.2 Da PI: 8.7465

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00003g00107.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.4	1.3e-09	154	188	56	90
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +tr gCk + v+k+++g+w +++l+++HnHela Peaxi162Scf00003g00107.1 154 DVTREGCKVLIYVSKKEEGTWAISRLVSDHNHELA 188 689******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-7	154	188	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MTPLPWCLVD RSNIALLLAG ILAGVCFCSL SHRVLGNEFV TGHLCSSLTS DLLLLKLKGE 60 RRSGSDAVTK LVSLLLLLRF TGSLLYLKFT GNNGENSSNV VVMGYKKEGG GARTNAATPK 120 GHRSRSGAAA SSAGSRSSVW FLPAGPLLCL IPHDVTREGC KVLIYVSKKE EGTWAISRLV 180 SDHNHELATP SSQKFSHSKR NKLEAQKNLI DLLDDSGVHP ANLPARDSFL TSSLLGLDRN 240 DKITPTISLF LTPPNFQELV TSIAFDGYTG IQRTNEMDIG DCPKCELETA RGNTRDFRTL 300 RTAPSSIWRL FEEY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB237912	8e-90	AB237912.1 Nicotiana sylvestris chloroplast DNA, complete sequence.
GenBank	AB240139	8e-90	AB240139.1 Nicotiana tomentosiformis chloroplast DNA, complete sequence.
GenBank	AJ316582	8e-90	AJ316582.1 Atropa belladonna complete chloroplast genome, strain Ab5p(kan).
GenBank	DQ231562	8e-90	DQ231562.1 Solanum tuberosum chloroplast, complete genome.
GenBank	DQ347958	8e-90	DQ347958.1 Solanum bulbocastanum cultivar PT29 chloroplast, complete genome.
GenBank	DQ386163	8e-90	DQ386163.2 Solanum tuberosum cultivar Desiree chloroplast, complete genome.
GenBank	JF772170	8e-90	JF772170.2 Solanum tuberosum isolate DM1-3-516-R44 chloroplast, complete genome.
GenBank	JF772171	8e-90	JF772171.1 Solanum tuberosum isolate RH89-039-16 chloroplast, complete genome.
GenBank	JF960517	8e-90	JF960517.1 Fraxinus chinensis photosystem I assembly protein Ycf3 (ycf3) gene, partial cds; chloroplast.
GenBank	JN563929	8e-90	JN563929.1 Nicotiana undulata chloroplast, complete genome.
GenBank	KF248009	8e-90	KF248009.1 Hyoscyamus niger chloroplast, complete genome.
GenBank	KM489054	8e-90	KM489054.2 Solanum commersonii strain Lz3.2 chloroplast, complete genome.
GenBank	KM489055	8e-90	KM489055.2 Solanum nigrum chloroplast, complete genome.
GenBank	KM489056	8e-90	KM489056.2 Solanum tuberosum chloroplast, complete genome.
GenBank	KP295964	8e-90	KP295964.1 Physalis peruviana plastid, complete genome.
GenBank	KT375308	8e-90	KT375308.1 Solanum nigrum chloroplast, complete genome.
GenBank	KU199713	8e-90	KU199713.1 Nicotiana tabacum cultivar TN90 plastid, complete genome.
GenBank	KU900232	8e-90	KU900232.1 Scopolia parviflora chloroplast, complete genome.
GenBank	Z00044	8e-90	Z00044.2 Nicotiana tabacum chloroplast genome DNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-08	FAR1-related sequence 5