PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g00267.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 252aa    MW: 27615.2 Da    PI: 9.5062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g00267.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00098100122123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C+ksF +   L  H  +H
  Peaxi162Scf00003g00267.1 100 YKCNVCNKSFHSYQALGGHKASH 122
                               9*********9988888887776 PP
2zf-C2H211.10.0013152174123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k+Fs+   L  H r+H
  Peaxi162Scf00003g00267.1 152 HECSICHKCFSSGQALGGHKRRH 174
                               78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.8E-496124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-796126No hitNo description
SMARTSM003550.0065100122IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-13100123IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.575100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-5149176No hitNo description
SMARTSM003550.4152174IPR015880Zinc finger, C2H2-like
PfamPF139129.0E-10152176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577152174IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTLETLKSST PKTSKPTIPL PPKPINDAID IHKRKRSKRP RIETPPSEKE FLALCLIMLA  60
RSGGKNPTTT PTTITNEPLQ VQEPINKPLQ VQEPINEQSY KCNVCNKSFH SYQALGGHKA  120
SHRNKNLSTT TVSYDDTNPS TSNSLNPSGR FHECSICHKC FSSGQALGGH KRRHYEGNLG  180
GGVSRGDTVI SSEGGGSAVI RRDFDLNLPP SPELTLGMSV DCERKSQLSG EQEVESPMPT  240
KKPRLAFRID GN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPETZFDB30.0D26085.1 Petunia x hybrida gene for zinc-finger DNA binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625967.13e-91PREDICTED: zinc finger protein ZAT10-like
TrEMBLQ408981e-175Q40898_PETHY; Zinc-finger DNA binding protein
STRINGXP_009599610.11e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-42salt tolerance zinc finger