PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g01722.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 190aa    MW: 21907.4 Da    PI: 6.0445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g01722.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000132460855
                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               Er+RR+++N ++  Lr+l+ k            +i + A+ YI++Lq
  Peaxi162Scf00003g01722.1 24 PERKRREKLNARLLALRSLMTKE-----------TIITDAITYIRELQ 60
                              6*******************998...........89999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-91974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-72474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-72560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTIKCDRKQN DGEVREYISK NLIPERKRRE KLNARLLALR SLMTKETIIT DAITYIRELQ  60
MNVNNLTEQL LEMDATLGDE VVTKKEEILD KWDIEVGNYY NFFFLFKQPE VQVAHISATK  120
LWIKIVCQKK RGAFTELMEA MNFLGFDLND TSVTSSNGAL LVTSSVEVVQ GGVIETQQIR  180
KFLLEIIRGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429ERKRRE
22530RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-49HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597290.15e-82PREDICTED: transcription factor DYT1
TrEMBLA0A1J6JHM71e-79A0A1J6JHM7_NICAT; Transcription factor dyt1
TrEMBLA0A1U7WGU42e-79A0A1U7WGU4_NICSY; transcription factor DYSFUNCTIONAL TAPETUM 1-like isoform X1
STRINGXP_009597290.12e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-37bHLH family protein